Yes, all the links have been moved. Sorry, I mentioned it at Talk:John and Gillian, but forgot to bring it up here as well which would have been more helpful. the pages remaining at Special:Whatlinkshere/John and Gillian are all forums and talks pages etc.
Also, the pages which have the templates you edited are still listed on the page, as it seems only upon editing the page does it get removed from the list. For example: Ian Chesterton has been edited since the template was updated, and so his page isn't listed anymore, whereas Ben Jackson has not.