Theory:Doctor Who television discontinuity and plot holes/The Almost People

You are exploring the Discontinuity Index, a place where any details or rumours about unreleased stories are forbidden.
Please discuss only those whole stories which have already been released, and obey our spoiler policy.

This page is for discussing the ways in which The Almost People doesn't fit well with other DWU narratives. You can also talk about the plot holes that render its own, internal narrative confusing.

Remember, this is a forum, so civil discussion is encouraged. However, please do not sign your posts. Also, keep all posts about the same continuity error under the same bullet point. You can add a new point by typing:

* This is point one.
::This is a counter-argument to point one.
:::This is a counter-argument to the counter-argument above
* This is point two.
::Explanation of point two.
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• The Doctors appear to be sharing the one sonic screwdriver in all of their scenes together. But when Doctor #1 is knocked unconscious, and Doctor #2 is locked in the acid room, they both have screwdrivers.

You are exploring the Discontinuity Index, a place where any details or rumours about unreleased stories are forbidden.
Please discuss only those whole stories which have already been released, and obey our spoiler policy.

This page is for discussing the ways in which The Almost People doesn't fit well with other DWU narratives. You can also talk about the plot holes that render its own, internal narrative confusing.

Remember, this is a forum, so civil discussion is encouraged. However, please do not sign your posts. Also, keep all posts about the same continuity error under the same bullet point. You can add a new point by typing:

* This is point one.
::This is a counter-argument to point one.
:::This is a counter-argument to the counter-argument above
* This is point two.
::Explanation of point two.
::Further discussion and query of point two.

... and so on. 

If the doctor sterelized the flesh, why was Amy still flesh at the end?