Kovarian

From Tardis Wiki, the free Doctor Who reference

"Eye patch lady" was a mysterious woman, seen by Amy Pond, who appeared at the little girl's bedroom door at Graystark Hall Children's Home.

She wore an eyepatch or a similar device over her right eye. She appeared through a hatch in the door which later on disappeared. Amy was startled by the woman and asked who she was, but the woman ignored her and replied, "No, I think she's just dreaming," to someone inside the room. When Amy entered, the room appeared to be empty, with no evidence of the woman or the hatch. (DW: Day of the Moon)

While asleep on a pirate ship, Amy was woken by a noise and saw the woman in a hatch that opened on the hull of the ship. She said " You're doing good, you're doing quite alright." (DW: The Curse of the Black Spot)