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The following is a list of the Ninth Doctor's appearances. The use of archival footage, promotional images or other such likenesses are indicated in brackets. Other information relating to the appearance in the story is also indicated in brackets.
Television
Doctor Who
Series 1
- Rose
- The End of the World
- The Unquiet Dead
- Aliens of London/World War Three
- Dalek
- The Long Game
- Father's Day
- The Empty Child/The Doctor Dances
- Boom Town
- Bad Wolf/The Parting of the Ways
Doctor Who Mini-episode
- Children in Need Special (re-cap; archival footage)
Series 2
- Army of Ghosts (flashback; archive material)
Series 3
- Human Nature (drawing)
2009 Specials
- The Next Doctor (archive material)
Series 5
- The Eleventh Hour (archive material)
- The Lodger (archive material)
Series 7
- Journey to the Centre of the TARDIS (voice only; archival material)
- Nightmare in Silver (flashback, archive material)
- The Name of the Doctor (portrayed by unknown actor, face unseen)
Prose Stories
Novels
BBC Eighth Doctor Adventures
BBC New Series Adventures - Ninth Doctor novels
- The Clockwise Man
- The Monsters Inside
- Winner Takes All
- The Deviant Strain
- Only Human
- The Stealers of Dreams
Time Hunter
Short fiction
Doctor Who Annual 2006
- Doctor vs Doctor
- The Masks of Makassar
- Pitter-Patter
- What I Did on My Christmas Holidays by Sally Sparrow
Doctor Who Magazine
Other
Audio
Big Finish Doctor Who audio stories
Comics
Doctor Who Annual 2006
Doctor Who Magazine
IDW Publishing
- The Forgotten (flashback)